Destefanis, E., Avşar, G., Groza, P., Romitelli, A., Torrini, S., Pir, P., Conticello S. G., Aguilo F., & Dassi, E. (2020). A mark of disease: how mRNA modifications shape genetic and acquired pathologies. RNA.

Çakır, B., Prete, M., Huang, N., Van Dongen, S., Pir, P., & Kiselev, V. Y. (2020). Comparison of visualisation tools for single-cell RNAseq data. NAR Genomics and Bioinformatics.

Ak, E., & Pir, P. (2020). Transcriptional response of signalling pathways to SARS-CoV-2 infection in normal human bronchial epithelial cells. bioRxiv.

Karakurt, H.U., Pir, P. (2020). Integration of transcriptomic profile of SARS-CoV-2 infected normal human bronchial epithelial cells with metabolic and protein-protein interaction networks. Turkish Journal of Biology.

Çakır, T., Kökrek, E., Avşar, G., Abdik, E., & Pir, P. (2019). Next-Generation Genome-Scale Models Incorporating Multilevel ‘Omics Data: From Yeast to Human. In Yeast Systems Biology (pp. 347-363). Humana, New York, NY.