Publications

Çakır, B., Prete, M., Huang, N., Van Dongen, S., Pir, P., & Kiselev, V. Y. (2020). Comparison of visualisation tools for single-cell RNAseq data. NAR Genomics and Bioinformatics.
https://doi.org/10.1093/nargab/lqaa052

Ak, E., & Pir, P. (2020). Transcriptional response of signalling pathways to SARS-CoV-2 infection in normal human bronchial epithelial cells. bioRxiv.
https://doi.org/10.1101/2020.06.20.163006

Karakurt, H.U., Pir, P. (2020). Integration of transcriptomic profile of SARS-CoV-2 infected normal human bronchial epithelial cells with metabolic and protein-protein interaction networks. Turkish Journal of Biology.
https://doi.org/10.3906/biy-2005-115

Çakır, T., Kökrek, E., Avşar, G., Abdik, E., & Pir, P. (2019). Next-Generation Genome-Scale Models Incorporating Multilevel ‘Omics Data: From Yeast to Human. In Yeast Systems Biology (pp. 347-363). Humana, New York, NY.
https://doi.org/10.1007/978-1-4939-9736-7_20